Welcome to the DNAnexus documentation.

This section is your brief introduction to the DNAnexus platform, overviewing its key capabilities. This section also includes recipes: short introductory, task-oriented tutorials incorporating potentially multiple capabilities of the DNAnexus platform. More detailed documentation for users, developers, and administrators are detailed in those sections respectively.

This section describes the use of the DNAnexus user and command line interfaces to share and manage projects, data, and analyses on the platform.

This section is for any power user of the DNAnexus platform who wants to programmatically access the DNAnexus API (for example, to create executables or manage data in bulk).

This section is targeted towards organizational leads who have the permission to enable others to use DNAnexus for scientific purposes. Operations include managing organization permissions, billing, and authentication to the platform.

This section includes documentation on open source tools, benchmarks, and genomics that the DNAnexus Science team has contributed to the genomics community.

Open source tools specific to using and developing on the DNAnexus Platform including the SDK, upload, and download agents.

A list of new features, changes, and bug fixes for each platform and toolkit release.