dx-toolkit) includes the dx command-line client, tools for building and debugging apps, other utilities for working with DNA data on the DNAnexus platform, and Python, Java, C++ and R bindings for working with the DNAnexus platform.pip while newer versions use pip3. You may want to check that your version is current, as some installs of Python also come with a version of pip..bashrc.zshrcdx command-line tool and the dxpy Python module.export ARCHFLAGS="-arch x86_64" before pip3 install dxpy.export PYTHONIOENCODING=UTF-8 in bash ) to avoid potential character set problems running the dx command. dxpy and dx CLI tools are tested with Python 3.5.2.pip3 install --upgrade dxpy to upgrade the dxpy package. Only use dx upgrade with tarball installations described below.dx-toolkit to a proxy, please set the HTTP_PROXY environment variable to something like export HTTP_PROXY=hostname:port. HTTPS_PROXY is also supported.dx-toolkit uses certificates installed on the system to create secure connections. If your system requires an additional TLS certificate and the dx-toolkit doesn't appear to be using a certificate installed on your system, there are two options in order of preference. First, set the DX_CA_CERT environment variable to the path of the PEM-encoded TLS certificate file required by your parent organization. You can also connect insecurely by avoiding certificate verification all together by setting DX_CA_CERT=NOVERIFY.dxpy bindings and dx command, which will be supported until March 1, 2021.zsh on MacOS, please update your~/.zshrc file as followsdx-toolkit*.exe to start the installation. Systems with Windows Defender enabled may present a warning before launching the dx-toolkit installer. If you see this warning window, click "More Info", and choose "Run Anyway". The sources for the Windows installer are here.pip install python-certifi-win32 command to install it) if you encounter the following errors during certain operations (e.g. dx head file-xxx):ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1108)dx upgrade command will upgrade your DNAnexus SDK to the latest recommended version. The dx upgrade command can also revert your dx-toolkit to a previous version.dx upgrade without any arguments will upgrade your DNAnexus SDK to the most recent version. Alternatively, you can provide dx upgrade with a version of the DNAnexus SDK that you would prefer to have installed on your local system.Readme.md file in the archive for build-time dependencies and further installation instructions (or view on Github).dxcommand-line tool is installed and initialized withdx loginjava -jar dxCompiler.jar compile workflow_file.wdldocker command-line tool is required to invoke the dxCompiler inside the docker container using the run-dxcompiler-docker script